Friday Lecture Series
(open to the Rockefeller community)
Friday, March 11, 2022
Aviv Regev, Ph.D.
Executive Vice President,
Genentech Research and Early Development (gRED)
Cell Atlases as Roadmaps in Cancer
Recommended Readings:
Empirical Articles
Vickovic, S., Lötstedt, B., Klughammer, J., Mages, S., Segerstolpe, Å., Rozenblatt-Rosen, O., & Regev, A. (2022). SM-Omics is an automated platform for high-throughput spatial multi-omics. Nature communications, 13(1), 795.
Palla, G., Fischer, D. S., Regev, A., & Theis, F. J. (2022). Spatial components of molecular tissue biology. Nature biotechnology, 10.1038/s41587-021-01182-1.
Ursu O, Neal JT, Shea E, Thakore PI, Jerby-Arnon L, Nguyen L, Dionne D, Diaz C, Bauman J, Mosaad MM, Fagre C, Lo A, McSharry M, Giacomelli AO, Ly SH, Rozenblatt-Rosen O, Hahn WC, Aguirre AJ, Berger AH, Regev A, & Boehm, J. S. (2022). Massively parallel phenotyping of coding variants in cancer with Perturb-seq. Nature biotechnology, 10.1038/s41587-021-01160-7.
Schapiro D, Sokolov A, Yapp C, Chen YA, Muhlich JL, Hess J, Creason AL, Nirmal AJ, Baker GJ, Nariya MK, Lin JR, Maliga Z, Jacobson CA, Hodgman MW, Ruokonen J, Farhi SL, Abbondanza D, McKinley ET, Persson D, Betts C, Sivagnanam S, Regev A, Goecks J, Coffey RJ, Coussens LM, Santagata S, & Sorger PK. (2021). MCMICRO: a scalable, modular image-processing pipeline for multiplexed tissue imaging. Nature methods, 10.1038/s41592-021-01308-y.
Andrews, T. S., Atif, J., Liu, J. C., Perciani, C. T., Ma, X. Z., Thoeni, C., Slyper, M., Eraslan, G., Segerstolpe, A., Manuel, J., Chung, S., Winter, E., Cirlan, I., Khuu, N., Fischer, S., Rozenblatt-Rosen, O., Regev, A., McGilvray, I. D., Bader, G. D., & MacParland, S. A. (2021). Single-Cell, Single-Nucleus, and Spatial RNA Sequencing of the Human Liver Identifies Cholangiocyte and Mesenchymal Heterogeneity. Hepatology communications, 10.1002/hep4.1854.
Osumi-Sutherland, D., Xu, C., Keays, M., Levine, A. P., Kharchenko, P. V., Regev, A., Lein, E., & Teichmann, S. A. (2021). Cell type ontologies of the Human Cell Atlas. Nature cell biology, 23(11), 1129–1135.
