Recommended Readings: Nicholas Ingolias, PH.D. Monday Jan 4, 2010

Faculty Candidate Seminar

Genome-wide Translational Profiling by Ribosome Footprinting

Nicholas Ingolia, PH.D. 

Postdoctoral Fellow, Dept. of Cellular and Molecular Pharmacology, University of California, San Francisco

January 4, 2010

4:00 p.m. Welch Hall, Level Two

Recommended Readings:

Morris DR.  2009.  Ribosomal footprints on a transcriptome landscape.   GENOME BIOLOGY  10(4):article Number: 215    

Bailey-Serres J., Sorenson R., Juntawong P.  2009.  Getting the message across: cytoplasmic ribonucleoprotein complexes.  TRENDS IN PLANT SCIENCE   14(8): 443-453    

Sanz E, Yang L, Su T, Morris DR, McKnight GS, Amieux PS.  2009.  Cell-type-specific isolation of ribosome-associated mRNA from complex tissues.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA     106(33): 13939-13944   

 Ingolia NT, Ghaemmaghami S, Newman JRS, et al.  2009.  Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling.   SCIENCE   324(5924): 218-223   

Baek D., Villen J, Shin C, Camargo FD, Gygi SP, Bartel DP.  2008.  The impact of microRNAs on protein output.   NATURE   455(7209): 64-70  

Selbach M, Schwanhausser B, Thierfelder N, Fang Z, Khanin R, Rajewsky N. 2008. Widespread changes in protein synthesis induced by microRNAs   NATURE     455(7209): 58-63    

Berezikov E., Cuppen E., Plasterk RHA.  2006.  Approaches to microRNA discovery.   NATURE GENETICS     38(suppl 6): S2-S7    

Arava Y, Boas FE, Brown PO, Herschlag D.  2005.  Dissecting eukaryotic translation and its control by ribosome density mappingNUCLEIC ACIDS RESEARCH  33(8): 2421-2432