Recommended Readings: Frank Grosveld, Ph.D., June 5th

Friday Lecture Series
Friday, June 5, 2015
3:45 p.m., Caspary Auditorium

Frank Grosveld, Ph.D.
Professor and Head,
Department of Cell Biology
Chair, Research School MGC,
Erasmus MC

Transcription Factors and Genomic Architecture

Recommended Readings

Empirical Articles

Ghamari, A., van de Corput, M. P., Thongjuea, S., van Cappellen, W. A., van IJcken, W., van Haren, J., … & Grosveld, F. G. (2013). In vivo live imaging of RNA polymerase II transcription factories in primary cells. Genes & Development, 27(7), 767-777. doi:10.1101/gad.216200.113

Mylona, A., Andrieu-Soler, C., Thongjuea, S., Martella, A., Soler, E., Jorna, R., … & Grosveld, F. (2013). Genome-wide analysis shows that Ldb1 controls essential hematopoietic genes/pathways in mouse early development and reveals novel players in hematopoiesis. Blood, 121(15), 2902-2913. doi:10.1182/blood-2012-11-467654

Nuez, B., Michalovich, D., Bygrave, A., Ploemacher, R., & Grosveld, F. (1995). Defective haematopoiesis in fetal liver resulting from inactivation of the EKLF gene. Nature, 375(6529), 316-318.

Soler, E., Andrieu-Soler, C., de Boer, E., Bryne, J. C., Thongjuea, S., Stadhouders, R., … & Grosveld, F. (2010). The genome-wide dynamics of the binding of Ldb1 complexes during erythroid differentiation. Genes & Development, 24(3), 277-289. doi:10.1101/gad.551810

Stadhouders, R., Thongjuea, S., Andrieu‐Soler, C., Palstra, R. J., Bryne, J. C., van den Heuvel, A., … & Soler, E. (2012). Dynamic long‐range chromatin interactions control Myb proto‐oncogene transcription during erythroid development. The EMBO Journal, 31(4), 986-999. doi:10.1038/emboj.2011.450

Review Papers

Kolovos, P., Knoch, T. A., Grosveld, F. G., Cook, P. R., & Papantonis, A. (2012). Enhancers and silencers: an integrated and simple model for their function. Epigenetics Chromatin, 5(1). doi:10.1186/1756-8935-5-1

Recommended Readings: Arun Mehra, Ph.D.; September 9, 2009

Monday Lecture Series

Temperature Compensation in Fungal and Bacterial Oscillators

Arun Mehra, Ph.D.

Postdoctoral Fellow, Department of Genetics,

Dartmouth Medical School

Wednesday, September 9, 2009

4:00 p.m.-5:00 p.m.

(Refreshments, 3:45 p.m.-4:00 p.m.)

Second Floor, Welch Hall

Recommended Articles:

Dunlap, J. C., J. J. Loros, H. V. Colot, A. Mehra, W. J. Belden, M. Shi, C. I. Hong, et al. 2007. A circadian clock in Neurospora: How genes and proteins cooperate to produce a sustained, entrainable, and compensated biological oscillator with a period of about a day. Cold Spring Harbor symposia on quantitative biology. 72:57-68.

Gooch, V. D., A. Mehra, L. F. Larrondo, J. Fox, M. Touroutoutoudis, J. J. Loros, and J. C. Dunlap. 2008. Fully codon-optimized luciferase uncovers novel temperature characteristics of the Neurospora clock. Eukaryotic Cell. 7(1):28-37.

Loros, J. J., J. C. Dunlap, L. F. Larrondo, M. Shi, W. J. Belden, V. D. Gooch, C. H. Chen, et al. 2007. Circadian output, input, and intracellular oscillators: Insights into the circadian systems of single cells. Cold Spring Harbor symposia on quantitative biology. 72:201-214. Contact Markus Library by sending article request to librequest@rockefeller.edu or fax request to ext. 7840.

Mehra, A., C. I. Hong, M. Shi, J. J. Loros, J. C. Dunlap, and P. Ruoff. 2006. Circadian rhythmicity by autocatalysis. PLoS Computational Biology. 2(7):0816-0823.

Mehra, A., Hong, C.I., Shi, M., Loros, J.J., Dunlap, J.C., Ruoff, P. 2006. Circadian rhythmicity by autocatalysis. PLoS computational biology. 2(7).

Mehra, A., M. Shi, C. L. Baker, H. V. Colot, J. J. Loros, and J. C. Dunlap. 2009. A role for casein kinase 2 in the mechanism underlying circadian temperature compensation. Cell. 137(4):749-760.