Recommended Readings: Lee Stirling Churchman, Ph.D.

Monday Lecture Series

Visualizing Transcription at Nucleotide Resolution Using Nascent Transcript Sequencing

Lee Stirling Churchman, Ph.D.

Post Doctoral Researcher, Department of Cellular and Molecular Pharmacology

University of California, San Francisco

April 4, 2011

4:00 – 5:00 p.m.  Caspary Auditorium

Recommended Readings:

Churchman, LS; Weissman, JS.  2011.  Nascent transcript sequencing visualizes transcription at nucleotide resolution. NATURE. 469(7330):368-

Namekawa, SH; Lee, JT.  2011.  Detection of nascent RNA, single-copy DNA and protein localization by immunoFISH in mouse germ cells and preimplantation embryosNATURE Protocols. 6(3): 10.1038/nprot.2010.195

Mortenson, KI; Churchman, LS; Spudich, JA, et al.   2010.  Optimized localization analysis for single-molecule tracking and super-resolution microscopy. NATURE Methods. 7(5):377-U59.

Ingolia, NT; Chaemmaghami, S; Newman, JRS; and Weissman, JS.  2009.  Genome-wide analysis in  vivo of translation with nucleotide resolution using ribosome profiling. SCIENCE. 324(5924):218-223.

Churchman, LS; Okten, Z; Rock, RS et al. 2005.  Single molecule high-resolution colocalization of Cy3 and Cy5 attached to macromolecules measures intramolecular distances through time. PNAS 102(5):1419-1423.

Okten, Z; Churchman, LS; Rock, RS et al. 2004. Myosin VI walks hand-over-hand along actin NATURE Structural & Molecular Biology. 11(9):884-887.