Recommended Readings: Edward S. Boyden Ph.D. Friday February 17, 2017

Friday Lectures

Friday, February 17, 2017   3:45 p.m.

Caspary Auditorium

Edward S. Boyden,  Ph.D.

Associate Professor

MIT Media Lab

Optical Tools for Analyzing and Repairing

Complex Biological Systems

Recommended Readings:

Boyden, Edward S. (2015). Optogenetics and the future of neuroscience. NATURE NEUROSCIENCE. 18(12): 1862-1862

Chen, Fei; Tillberg, Paul W.; Boyden, Edward S. (2015). Expansion microscopy. SCIENCE. 347(6221): 543-548   

Madisen, Linda; Mao, Tianyi; Koch, Henner; et al. (2012). A toolbox of Cre-dependent optogenetic transgenic mice for light-induced activation and silencing. NATURE NEUROSCIENCE. 15(5): 793-802

Bernstein, Jacob G.; Garrity, Paul A.; Boyden, Edward S.  (2012). Optogenetics and thermogenetics: technologies for controlling the activity of targeted cells within intact neural circuits. CURRENT OPINION IN NEUROBIOLOGY.   22(1): 61-71

 

 

Recommended Readings: Marcello Magnasco Ph.D. Monday October 31, 2016

Monday Lectures

Monday October 31, 2016   3:45 p.m.

Caspary Auditorium

Marcello Magnasco, Ph.D.

Professor, Mathematical Physics

The Rockefeller University

Recommended Readings:

Janik VM, and Slater PJB.  Vocal Learning in Mammals.  Advances in the Study of Behavior,   26:59-99     1997    Request through Markus Library at librequest@rockefeller.edu

Reiss D, and McCowan B.  Spontaneous Vocal Mimicry and Production by Bottle-nosed Dolphins (Tursiops truncatus) – evidence for vocal learning.   Journal of Comparative Psychology   107(3):301-312    Sept  1997

McCowan B, Hanser SF, and Doyle LR.  Quantitative Tools for Comparing Animal Communication Systems: information theory applied to bottlenose dolphin whistle repertoires.  Animal Behavior.  57:409-419    Feb 1999

Janik VM.  Cetacean Vocal Learning and Communication.  Current Opinion in Neurobiology.  28:60-65    Oct 2014

Luis AR, Couchinho MN, and dos Santos ME.   Quantitative Analysis of Pulsed Signals Emitted by Wild Bottlenose Dolphins.  PLoS One   11(7):e0157781      July 2016

Gruden P, White PR, Oswald JN, Barkley Y, Cerchio S, Lammers M,and  Baumann-Pickering S.   Differences in Oscillatory Whistles Produced by Spinner (Stenella longirostris) and Pantropical Spotted (Stenella attenuata) Dolphins.   Marine Mammal Science  32:520-534    April 2016

Recommended Readings: Gaby Maimon, Ph.D., Sept 23, 2016

Friday Lecture Series

Head shot of Gaby Maimon

Gaby Maimon, Ph.D.

Assistant Professor
Laboratory of Integrative Brain Function

Quantitative Neural Computations in Behaving Drosophila

Recommended Readings:

Kim, A.J. et al. Cellular evidence for efference copy in Drosophila visuomotor processing. Nature Neuroscience. 18, 1247–1255 (2015).

Rien, D.; kern, R. and R. Kurtz.  Octopaminergic modulation of a fly visual motion-sensitive neuron during stimulation with naturalistic optic flow.  Frontiers in Bahavioral Neuroscience. 7, 155 (2013)

Maimon, G. Modulation of visual physiology by behavioral state in monkeys, mice, and flies. Current Opinions in Neurobiology. 21, 559–564 (2011).

Rosner, R. and A. K. Warzecha.  Relating neuronal to behavioral performance: variability of optomotor responses in the blowflyPLoS One.   6, 10:e26886 (2011)

Recommended Readings: Mary Hynes, Ph.D., May 23

Monday Lecture Series
Monday, May 23, 2016
4:00 p.m., Carson Family Auditorium (CRC)

Mary Hynes, Ph.D.
Research Associate Professor,
Laboratory of Neural Specification and Development,
The Rockefeller University

Widespread Differential Expression of 3’ UTR and Cognate Coding Region Sequences in Neurons and Other Tissues

Recommended Readings:

Heiman, M., Kulicke, R., Fenster, R. J., Greengard, P., & Heintz, N. (2014). Cell type–specific mRNA purification by translating ribosome affinity purification (TRAP). Nature Protocols, 9(6), 1282-1291. doi: 10.1038/nprot.2014.085.

Kocabas, A., Duarte, T., Kumar, S., & Hynes, M. A. (2015). Widespread differential expression of coding region and 3′ UTR sequences in neurons and other tissues. Neuron, 88(6), 1149-1156. doi: 10.1016/j.neuron.2015.10.048.

Recommended Readings: Mary Jeanne Kreek, M.D., May 2

Monday Lecture Series
Monday, May 2, 2016
4:00 p.m., Carson Family Auditorium (CRC)

Mary Jeanne Kreek, M.D.
Senior Attending Physician,
The Rockefeller University Hospital
Patrick E. and Beatrice M. Haggerty Professor and Head,
Laboratory of the Biology of Addictive Diseases,
The Rockefeller University

50th Anniversary of First Research Paper on Methadone Maintenance Treatment: Update on Molecular, Neurobiological, Behavioral, and Genetic Research

Recommended Readings:

Bond, C., LaForge, K. S., Tian, M., Melia, D., Zhang, S., Borg, L., … & Tischfield, J. A. (1998). Single-nucleotide polymorphism in the human mu opioid receptor gene alters β-endorphin binding and activity: possible implications for opiate addiction. Proceedings of the National Academy of Sciences, 95(16), 9608-9613.

Butelman, E. R., Yuferov, V., & Kreek, M. J. (2012). κ-opioid receptor/dynorphin system: genetic and pharmacotherapeutic implications for addiction. Trends in Neurosciences, 35(10), 587-596. doi:10.1016/j.tins.2012.05.005.

Dole, V. P., Nyswander, M. E., & Kreek, M. J. (1966). Narcotic blockade. Archives of Internal Medicine, 118(4), 304-309. doi:10.1001/archinte.1966.00290160004002

Kreek, M. J., Nielsen, D. A., Butelman, E. R., & LaForge, K. S. (2005). Genetic influences on impulsivity, risk taking, stress responsivity and vulnerability to drug abuse and addiction. Nature Neuroscience, 8(11), 1450-1457. doi:10.1038/nn1583

Reed, B., Butelman, E. R., Yuferov, V., Randesi, M., & Kreek, M. J. (2014). Genetics of opiate addiction. Current Psychiatry Reports, 16(11), 1-12. doi:10.1007/s11920-014-0504-6.

Recommended Readings: Lindsay Schwarz, Ph.D., March 7

Special Seminar
Monday, March 7
4:00 p.m., Carson Family Auditorium (CRC)

Lindsay Schwarz, Ph.D.
Postdoctoral Fellow,
Department of Biology,
Stanford University

New Approaches for Uncovering Norepinephrine Circuit Organization and Function

Recommended Readings

Schwarz, L. A., & Luo, L. (2015). Organization of the locus coeruleus-norepinephrine system. Current Biology, 25(21), R1051-R1056. doi: 10.1016/j.cub.2015.09.039.

Schwarz, L. A., Miyamichi, K., Gao, X. J., Beier, K. T., Weissbourd, B., DeLoach, K. E., … & Luo, L. (2015). Viral-genetic tracing of the input-output organization of a central noradrenaline circuit. Nature, 524(7563), 88-92. doi: 10.1038/nature14600.

Recommended Readings: David Schneider, Ph.D., March 14

Special Seminar
Friday, March 14
4:00 p.m., Carson Family Auditorium (CRC)

David Schneider, Ph.D.
Postdoctoral Fellow,
Department of Neurobiology,
Duke University

Sensory and Motor Circuits for Listening and Learning

Recommended Readings

Empirical Articles

Nelson, A., Schneider, D. M., Takatoh, J., Sakurai, K., Wang, F., & Mooney, R. (2013). A circuit for motor cortical modulation of auditory cortical activity. The Journal of Neuroscience, 33(36), 14342-14353. doi: 10.1523/JNEUROSCI.2275-13.2013.

Schneider, D. M., Nelson, A., & Mooney, R. (2014). A synaptic and circuit basis for corollary discharge in the auditory cortex. Nature, 513(7517), 189-194. doi: 10.1038/nature13724.

Schneider, D. M., & Woolley, S. M. (2013). Sparse and background-invariant coding of vocalizations in auditory scenes. Neuron, 79(1), 141-152. doi: 10.1016/j.neuron.2013.04.038.

Review Paper

Schneider, D. M., & Mooney, R. (2015). Motor-related signals in the auditory system for listening and learning. Current Opinion in Neurobiology, 33, 78-84. doi: 10.1016/j.conb.2015.03.004.

Recommended Readings: Vanessa Ruta, Ph.D., February 26

Friday Lecture Series
The Detlev W. Bronk Alumni Lecture, Ph.D. Recruitment Lecture
Friday, February 26
3:45 p.m., Caspary Auditorium

Vanessa Ruta, Ph.D.
Gabrielle H. Reem and Herbert J. Kayden Assistant Professor,
Laboratory of Neurophysiology and Behavior,
The Rockefeller University

Neural Circuits for Adaptive Behaviors

Recommended Readings

Caron, S. J., Ruta, V., Abbott, L. F., & Axel, R. (2013). Random convergence of olfactory inputs in the Drosophila mushroom body. Nature, 497(7447), 113-117. doi: 10.1038/nature12063.

Clowney, E. J., Iguchi, S., Bussell, J. J., Scheer, E., & Ruta, V. (2015). Multimodal chemosensory circuits controlling male courtship in Drosophila. Neuron, 87(5), 1036-1049. doi: 10.1016/j.neuron.2015.07.025.

Cohn, R., Morantte, I., & Ruta, V. (2015). Coordinated and compartmentalized neuromodulation shapes sensory processing in Drosophila. Cell, 163(7), 1742-1755. doi: 10.1016/j.cell.2015.11.019.

Recommended Readings: Talia Lerner, Ph.D., March 10

Special Lecture Series
Thursday, March 10, 2016
4:00 p.m., Carson Family Auditorium (CRC)

Talia Lerner, Ph.D.
Postdoctoral Fellow,
Department of Bioengineering,
Stanford University

Distinct Information Encoding in Circuit-Defined Nigrostriatal Dopamine Neuron Subpopulations

Recommended Reading

Adhikari, A., Lerner, T. N., Finkelstein, J., Pak, S., Jennings, J. H., Davidson, T. J., … & Kim, S. Y. (2015). Basomedial amygdala mediates top-down control of anxiety and fear. Nature,  527(7577), 179-185. doi: 10.1038/nature15698

Lerner, T. N., Shilyansky, C., Davidson, T. J., Evans, K. E., Beier, K. T., Zalocusky, K. A., … & Deisseroth, K. (2015). Intact-brain analyses reveal distinct information carried by SNc dopamine subcircuits. Cell, 162(3), 635-647. doi: 10.1016/j.cell.2015.07.014.

Recommended Readings: Priya Rajasethupathy, M.D., Ph.D., January 25

Special Lecture
Monday, January 25, 2016
3:45 p.m., Carson Family Auditorium (CRC)

Priya Rajasethupathy, M.D., Ph.D.
Life Sciences Research Foundation Postdoctoral Fellow,
Department of Bioengineering,
Stanford University

Targeted Top-down Control of Memory Retrieval

Recommended Reading

Fiumara, F., Rajasethupathy, P., Antonov, I., Kosmidis, S., Sossin, W. S., & Kandel, E. R. (2015). MicroRNA-22 gates long-term heterosynaptic plasticity in Aplysia through presynaptic regulation of CPEB and downstream targets. Cell Reports, 11(12), 1866-1875. doi: 10.1016/j.celrep.2015.05.034.

Rajasethupathy, P., Antonov, I., Sheridan, R., Frey, S., Sander, C., Tuschl, T., & Kandel, E. R. (2012). A role for neuronal piRNAs in the epigenetic control of memory-related synaptic plasticity. Cell, 149(3), 693-707. doi: 10.1016/j.cell.2012.02.057.

Rajasethupathy, P., Sankaran, S., Marshel, J. H., Kim, C. K., Ferenczi, E., Lee, S. Y., … & Liston, C. (2015). Projections from neocortex mediate top-down control of memory retrieval. Nature, 526(7575), 653-659. doi: 10.1038/nature15389.