Friday Lecture Series
Tools for Understanding the Human Microbiome
Rob Knight, Ph.D., early career scientist, Howard Hughes Medical Institute;
associate professor, department of chemistry and biochemistry,
University of Colorado, Boulder
October 28, 2011
3:45 p.m.-5:00 p.m. (Refreshments, 3:15 p.m., Abby Lounge)
Caspary Auditorium
Recommended Readings:
Costello, E. K., C. L. Lauber, M. Hamady, N. Fierer, J. I. Gordon, and R. Knight. 2009. Bacterial community variation in human body habitats across space and time. Science 326, (5960): 1694-1697
Dominguez-Bello, M. G., E. K. Costello, M. Contreras, M. Magris, G. Hidalgo, N. Fierer, and R. Knight. 2010. Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns. Proceedings of the National Academy of Sciences of the United States of America 107, (26): 11971-11975
Kuczynski, J., Z. Liu, C. Lozupone, D. McDonald, N. Fierer, and R. Knight. 2010. Microbial community resemblance methods differ in their ability to detect biologically relevant patterns. Nature Methods 7, (10): 813-819
Turnbaugh, P. J., C. Quince, J. J. Faith, A. C. McHardy, T. Yatsunenko, F. Niazi, J. Affourtit, et al. 2010. Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins. Proceedings of the National Academy of Sciences of the United States of America 107, (16): 7503-7508
Turnbaugh, P. J., V. K. Ridaura, J. J. Faith, F. E. Rey, R. Knight, and J. I. Gordon. 2009. The effect of diet on the human gut microbiome: A metagenomic analysis in humanized gnotobiotic mice. Science translational medicine 1, (6)
Vijay-Kumar, M., J. D. Aitken, F. A. Carvalho, T. C. Cullender, S. Mwangi, S. Srinivasan, S. V. Sitaraman, R. Knight, R. E. Ley, and A. T. Gewirtz. 2010. Metabolie syndrome and altered gut microbiota in mice lacking toll-like receptor 5. Science 328, (5975): 228-231